traubcell.g.txt

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// genesis - "Stand-alone" version of the traub91 tutorial
setclock  0  0.00005            // set the simulation clock

/* file for 1991 Traub model channels */
include traub91proto.g

// Create a library of prototype elements to be used by the cell reader
create neutral /library
pushe /library
create symcompartment symcompartment
make_Na
make_Ca
make_K_DR
make_K_AHP
make_K_C
make_K_A
make_Ca_conc
pope

// Build the cell from a parameter file using the cell reader
readcell CA3.p /cell 
setfield /cell/soma inject 0.2e-9  // Provide 0.2 nA injection current

include graphics.g  // You create this file to provide a GUI
reset
Contents
show floating TOC
Introduction
GENESIS Scripting
Some preliminaries
Getting started with GENESIS programming
GENESIS Scripting Example
tutorial1.g
A Basic Tutorial on GENESIS - Constructing a Simple Compartment
Some Notation
Getting Started
Interpreter Basics
Basic Objects
Creating Elements
Examining Elements
Moving About in the Hierarchy
Modifying Elements
Running a Simulation
Adding Graphics
Linking Elements
Adding Buttons to a Form
Making realistic neural compartments
Tutorial2.g
Building a cell the easy way
SimpleCell.g
cell.p
Creating channel prototypes
protodefs.g
Creating the graphics
graphics.g
An exercise (highly recommended):
Another exercise
Making synaptic connections
Adding synapses and providing synaptic input
Building small networks and circuits
Creating large networks with GENESIS
The example simulation
Constructing the network
Some other things to try
What next?
Where do we go from here?
Using implicit numerical methods
Spike train objects in GENESIS
Using GENESIS on parallel computers
Other examples and GENESIS features
Appendix: Detours
Detour 1: Building a cell without the cell reader
Detour 2: Creating and modifying channel models
Detour 3: Making more realistic (cortical) cell models
Why bother?
Building the model
References
Used Hyperlinks
Navigation
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